5.1. Step-by-step instructions for creating datasets (‘omics)

5.1. Motivation and Requirements


Describe all meta-information necessary for reproducibility and downstream analysis (QC, normalisation, association with traits of interest, toxicological predictions). This includes investigation, sample and assay parameters and links to ontology terms.

This is a step towards:

Integration with other toxicological resources
A sustainable infrastructure (well annotated experiments can be uploaded to public repositories)
Maximum and effective use of public data
Systematic modelling of Adverse Outcome Pathways (AOPs)


A SEURAT customized version of ISAcreator software (able to interface with the ToxBank Data Warehouse) is available from the help page of the ToxBank Data Warehouse.

Proceed to:

5.2. Step-by-step instructions for creating datasets (‘omics)

5.2. Steps